Package: estar 1.0-1

estar: Ecological Stability Metrics

Standardises and facilitates the use of eleven established stability properties that have been used to assess systems’ responses to press or pulse disturbances at different ecological levels (e.g. population, community). There are two sets of functions. The first set corresponds to functions that measure stability at any level of organisation, from individual to community and can be applied to a time series of a system’s state variables (e.g., body mass, population abundance, or species diversity). The properties included in this set are: invariability, resistance, extent and rate of recovery, persistence, and overall ecological vulnerability. The second set of functions can be applied to Jacobian matrices. The functions in this set measure the stability of a community at short and long time scales. In the short term, the community’s response is measured by maximal amplification, reactivity and initial resilience (i.e. initial rate of return to equilibrium). In the long term, stability can be measured as asymptotic resilience and intrinsic stochastic invariability. Figueiredo et al. (2025) <doi:10.32942/X2M053>.

Authors:Ludmilla Figueiredo [aut, cre], Viktoriia Radchuk [aut], Cédric Scherer [ctb]

estar_1.0-1.tar.gz
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manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
estar/json (API)

# Install 'estar' in R:
install.packages('estar', repos = c('https://ludmillafigueiredo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ludmillafigueiredo/estar/issues

Datasets:
  • aquacomm_fgps - Macroinvertebrate aquatic community.
  • aquacomm_resps - Macroinvertebrate aquatic community formatted for univariate metrics.
  • comm_base - Macroinvertebrate aquatic community data formatted for calculation of compositional stability metrics
  • comm_dist - Macroinvertebrate aquatic community data formatted for calculation of compositional stability metrics

On CRAN:

Conda:

5.89 score 2 stars 13 scripts 385 downloads 12 exports 26 dependencies

Last updated from:ac54552bf8. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK155
source / vignettesOK410
linux-release-x86_64OK155
macos-release-arm64OK131
macos-oldrel-arm64OK171
windows-develOK104
windows-releaseOK111
windows-oldrelOK87
wasm-releaseOK116

Exports:asympt_resilextractBinit_resilinvariabilitymax_ampoevpersistencereactivityrecovery_extentrecovery_rateresistancestoch_var

Dependencies:cliclustercpp11farverggplot2gluegtableisobandlabelinglatticelifecycleMASSMatrixmgcvnlmepermuteR6RColorBrewerrlangS7scalesvctrsveganviridisLitewithrzoo

Jacobian stability properties
Overview of demonstration data | MARSS models | Introduction to MARSS models | MARSS in estar | Minimal case | Reactivity | Maximal amplification | Initial resilience | Asymptotic resilience | Stochastic invariability | Performance of functions | References

Last update: 2026-05-20
Started: 2025-11-26

Functional stability properties
Overview of the data | Main functions | Functional stability | Invariability | Resistance | Rate of recovery | Extent of recovery | Persistence | Overall Ecological Vulnerability | Performance | Recovery rate | Recovery extent | References

Last update: 2026-05-20
Started: 2025-11-26